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Posts
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Carlos Quiles
Updated version 1.90.4 with new mtDNA reported in Evaluation of DNA conservation in Nile-Saharan environment, Missiminia, in Nubia: Tracking maternal lineage of “X-Group”, by Yahia Mehdi Seddik Cherifi, Selma Amrani.
Updated version 1.90.5, including corrections to I1 subclades (in my file) posted on YFull Facebook Group by Simon Hedley.
Included two mtDNA reported by Rogers et al. from WSU Human Biology Open Access preprints at https://digitalcommons.wayne.edu/humbiol_preprints/160
Version 1.90.6, updated with reports from Simon Hedley’s great Haplogroup I1 Ancient DNA Samples Google Map.
He includes very detailed BAM analyses of ancient I1 samples reported to date.
Version 1.90.8 includes minor updates and mtDNA from the study Mitochondrial genomes from Bronze Age Poland reveal genetic continuity from the Late Neolithic and additional genetic affinities with the steppe populations, by Juras et al. J. Phys. Anthropol. (2020)
Updated to version 1.90.15 (to keep my personal update numbers), including the recent Linderholm et al. (2020) and Furtwängler et al. (2020), as well as mtDNA of Hanging Coffin samples from Zhang et al. (2020).
Uploaded version 1.91, including – among other minor changes – updates to SNP inferences by amateurs, report on Egyptian mummies, the new Béla III Y-chromosome report, and the latest Nakatsuka et al. (2020) about the evolution of Andean populations.
Updated from version 1.91.9 to version 1.91.12, including the new Baikal samples from Yu et al. Cell (2020) and the Maros samples from Zegarac et al. bioRxiv (2020), as well as the few reported Trentino samples in Graeffen’s thesis (2020), the few mtDNA from East Asian genomes, or the few Inner Mongolia samples from Li et al. Phys. Anthr. (2020), which updates their previous Li et al. (2017) report.
Updated to version 1.92 with all recently published papers, including Lake Baikal, East Asia, SE Asia, Caribbean (x2), Middle East (x2), France (x2), or the new Pitted Ware samples of BAC influence.
Update to version 1.93 with automated SNP calls from genotypes shared by Kolgeh (as suggested in comments).
More recent versions (1.93.x) include mainly corrections to (exact and/or randomized) location of samples for the new Web App GIS Map (read more about it here).
Version 2.0x includes new columns for:
- FTDNA haplotree
- YFull mtree
- Responsible for mtDNA SNP calls and the SNP calls published by them.
- Lactase Persistence – now separated from “other”, more focused on diseases.
The most interesting part is the correction of nomenclature and hyperlinks, so that the file may be accurately used for mtDNA phylogeography.
Newly reported samples – or recently found by me – have also been added.
The new standard versions don’t have fields specific for GIS maps.
Announcement is here.
Updated to version 2.01.7 with data from the new Cassidy et al. (2020) mostly updating data from her 2017 thesis.
Also added skin – hair – eye color data thanks to their assessments, even though they are limited to early available (and more ‘western’) samples.
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